FILTERS:
pvalue:0.1
Motif craMmus391237
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus391237
Discovery p-value 2.79E-03
Motif location chr11: 44,573,991-44,574,000 (+) (10 bp)
Search region location chr11: 44,573,211-44,575,086 (+) (1,876 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 22 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Equus caballus, Erinaceus europaeus, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Macropus eugenii, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Spermophilus tridecemlineatus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): POU2F1(7.60E-05) ,    POU2F1(1.95E-04) ,    OCA-B(3.06E-04) ,    POU2F1(5.40E-04)
ORegAnno: (1 annot.): FoxA1(3.06E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATsmAAmsAA TTwkTTkwAT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 22 0 0 13 22 22 14 0 22 22
C 0 0 8 9 0 0 8 13 0 0
G 0 0 14 0 0 0 0 9 0 0
T 0 22 0 0 0 0 0 0 0 0
A T n m A A n s A A
1 2 3 4 5 6 7 8 9 10
A 0 0 0 0 0 0 0 0 22 0
C 0 0 9 0 0 0 0 14 0 0
G 0 0 13 8 0 0 9 8 0 0
T 22 22 0 14 22 22 13 0 0 22
T T s n T T k n A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000057098 Target Mus musculus chr11:44,573,991-44,574,000 + ATGCAAAGAA – TTCTTTGCAT
ENSMUSG00000057098_BTAU Orthologue Bos taurus chr7:47,752,236-47,752,245 + ATGAAAACAA – TTGTTTTCAT
ENSMUSG00000057098_CFAM Orthologue Canis familiaris chr4:54,581,682-54,581,691 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000057098_CHOF:124-133 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_CJAC Orthologue Callithrix jacchus ENSMUSG00000057098_CJAC:1,421-1,430 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_CPOR Orthologue Cavia porcellus ENSMUSG00000057098_CPOR:1,111-1,120 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_ECAB Orthologue Equus caballus ENSMUSG00000057098_ECAB:941-950 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_EEUR Orthologue Erinaceus europaeus ENSMUSG00000057098_EEUR:902-911 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_ETEL Orthologue Echinops telfairi scaffold_308245:5,088-5,097 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_FCAT Orthologue Felis catus ENSMUSG00000057098_FCAT:1,210-1,219 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_HSAP Orthologue Homo sapiens chr5:158,459,063-158,459,072 + ATGAAAACAA – TTGTTTTCAT
ENSMUSG00000057098_LAFR Orthologue Loxodonta africana scaffold_50880:11,120-11,129 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_MEUG Orthologue Macropus eugenii ENSMUSG00000057098_MEUG:1,212-1,221 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_MMUL Orthologue Macaca mulatta SCAFFOLD10006:254,754-254,763 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_OCUN Orthologue Oryctolagus cuniculus scaffold_214962:111,864-111,873 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_OGAR Orthologue Otolemur garnettii ENSMUSG00000057098_OGAR:1,297-1,306 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_PCAP Orthologue Procavia capensis ENSMUSG00000057098_PCAP:335-344 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_PPYG Orthologue Pongo pygmaeus ENSMUSG00000057098_PPYG:1,129-1,138 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_PTRO Orthologue Pan troglodytes chr4:165,635,407-165,635,416 + ATCCAACGAA – TTCGTTGGAT
ENSMUSG00000057098_RNOR Orthologue Rattus norvegicus chr10:29,770,896-29,770,905 – ATCCAACGAA + TTCGTTGGAT
ENSMUSG00000057098_SSCR Orthologue Sus scrofa ENSMUSG00000057098_SSCR:1,212-1,221 – ATGAAAACAA + TTGTTTTCAT
ENSMUSG00000057098_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000057098_STRI:958-967 – ATGAAAACAA + TTGTTTTCAT

Questions or comments: cisred@bcgsc.ca