FILTERS:
pvalue:0.1
Motif craMmus392542
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus392542
Discovery p-value 2.79E-03
Motif location chr2: 111,604,459-111,604,464 (+) (6 bp)
Search region location chr2: 111,603,538-111,605,237 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 16 species: Mus musculus, Canis familiaris, Callithrix jacchus, Dasypus novemcinctus, Danio rerio, Equus caballus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Pan troglodytes, Rattus norvegicus, Sorex araneus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 3 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (3 annot.): Chx10(8.24E-05) ,    HOXA5(8.06E-04) ,    POU3F2(8.31E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAATTT AAATTA
Position frequency matrix
1 2 3 4 5 6
A 0 16 16 0 0 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 16 0 0 16 16 16
T A A T T T
1 2 3 4 5 6
A 16 16 16 0 0 16
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 0 0 16 16 0
A A A T T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000057149 Target Mus musculus chr2:111,604,459-111,604,464 + TAATTT – AAATTA
ENSMUSG00000057149_CFAM Orthologue Canis familiaris chr10:19,273,584-19,273,589 + TAATTT – AAATTA
ENSMUSG00000057149_CJAC Orthologue Callithrix jacchus ENSMUSG00000057149_CJAC:619-624 – TAATTT + AAATTA
ENSMUSG00000057149_DNOV Orthologue Dasypus novemcinctus scaffold_89437:3,056-3,061 + TAATTT – AAATTA
ENSMUSG00000057149_DRER Orthologue Danio rerio chr15:35,978,297-35,978,302 + TAATTT – AAATTA
ENSMUSG00000057149_ECAB Orthologue Equus caballus ENSMUSG00000057149_ECAB:382-387 – TAATTT + AAATTA
ENSMUSG00000057149_ETEL Orthologue Echinops telfairi scaffold_57819:170-175 – TAATTT + AAATTA
ENSMUSG00000057149_GGAL Orthologue Gallus gallus chr5:2,409,139-2,409,144 + TAATTT – AAATTA
ENSMUSG00000057149_HSAP Orthologue Homo sapiens chr14:19,554,871-19,554,876 + TAATTT – AAATTA
ENSMUSG00000057149_LAFR Orthologue Loxodonta africana scaffold_3200:115,599-115,604 + TAATTT – AAATTA
ENSMUSG00000057149_MDOM Orthologue Monodelphis domestica scaffold_12:31,912,575-31,912,580 + TAATTT – AAATTA
ENSMUSG00000057149_MMUL Orthologue Macaca mulatta SCAFFOLD118315:625-630 – TAATTT + AAATTA
ENSMUSG00000057149_PTRO Orthologue Pan troglodytes 19_random:14,223,013-14,223,018 – TAATTT + AAATTA
ENSMUSG00000057149_RNOR Orthologue Rattus norvegicus chr3:97,198,236-97,198,241 – TAATTT + AAATTA
ENSMUSG00000057149_SARA Orthologue Sorex araneus ENSMUSG00000057149_SARA:25-30 + TAATTT – AAATTA
ENSMUSG00000057149_XTRO Orthologue Xenopus tropicalis scaffold_786:552,423-552,428 – TAATTT + AAATTA

Questions or comments: cisred@bcgsc.ca