FILTERS:
pvalue:0.1
Motif craMmus395532
More information about this gene at Ensembl.org Go to UCSC
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+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus395532
Discovery p-value 7.80E-04
Motif location chr14: 48,716,098-48,716,103 (+) (6 bp)
Search region location chr14: 48,715,542-48,717,475 (+) (1,934 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 10 species: Mus musculus, Canis familiaris, Dasypus novemcinctus, Homo sapiens, Loxodonta africana, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Pan troglodytes, Rattus norvegicus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): MEF-2A(2.68E-04) ,    aMEF-2(3.03E-04) ,    Cdx-2(4.13E-04) ,    aMEF-2(7.44E-04) ,    POU2F1(7.64E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATTTAT ATAAAT
Position frequency matrix
1 2 3 4 5 6
A 10 0 0 0 10 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 10 10 10 0 10
A T T T A T
1 2 3 4 5 6
A 10 0 10 10 10 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 10 0 0 0 10
A T A A A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000057831 Target Mus musculus chr14:48,716,098-48,716,103 + ATTTAT – ATAAAT
ENSMUSG00000057831_CFAM Orthologue Canis familiaris chr8:5,588,715-5,588,720 + ATTTAT – ATAAAT
ENSMUSG00000057831_DNOV Orthologue Dasypus novemcinctus scaffold_107623:4,915-4,920 + ATTTAT – ATAAAT
ENSMUSG00000057831_HSAP Orthologue Homo sapiens chr14:21,700,437-21,700,442 – ATTTAT + ATAAAT
ENSMUSG00000057831_LAFR Orthologue Loxodonta africana scaffold_16832:20,551-20,556 – ATTTAT + ATAAAT
ENSMUSG00000057831_MMUL Orthologue Macaca mulatta SCAFFOLD90959:53,805-53,810 + ATTTAT – ATAAAT
ENSMUSG00000057831_OCUN Orthologue Oryctolagus cuniculus scaffold_179527:34,971-34,976 + ATTTAT – ATAAAT
ENSMUSG00000057831_OGAR Orthologue Otolemur garnettii ENSMUSG00000057831_OGAR:162-167 – ATTTAT + ATAAAT
ENSMUSG00000057831_PTRO Orthologue Pan troglodytes chr15:20,634,163-20,634,168 + ATTTAT – ATAAAT
ENSMUSG00000057831_RNOR Orthologue Rattus norvegicus chr15:31,899,470-31,899,475 – ATTTAT + ATAAAT

Questions or comments: cisred@bcgsc.ca