FILTERS:
pvalue:0.1
Motif craMmus407182
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus407182
Discovery p-value 2.79E-03
Motif location chr10: 128,762,540-128,762,547 (+) (8 bp)
Search region location chr10: 128,761,231-128,762,930 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 14 species: Mus musculus, Bos taurus, Canis familiaris, Echinops telfairi, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Procavia capensis, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): FOXD3(1.66E-04) ,    FOXJ2(2.86E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AAATATTT AAATATTT
Position frequency matrix
1 2 3 4 5 6 7 8
A 14 13 14 0 13 0 3 0
C 0 1 0 0 0 0 1 0
G 0 0 0 0 1 0 0 0
T 0 0 0 14 0 14 10 14
A A A T A T T T
1 2 3 4 5 6 7 8
A 14 10 14 0 14 0 0 0
C 0 0 0 1 0 0 0 0
G 0 1 0 0 0 0 1 0
T 0 3 0 13 0 14 13 14
A A A T A T T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000059402 Target Mus musculus chr10:128,762,540-128,762,547 + AAATATTT – AAATATTT
ENSMUSG00000059402_BTAU Orthologue Bos taurus chr5:35,273,867-35,273,874 + AAATATAT – ATATATTT
ENSMUSG00000059402_CFAM Orthologue Canis familiaris chr27:3,026,213-3,026,220 – AAATATTT + AAATATTT
ENSMUSG00000059402_ETEL Orthologue Echinops telfairi scaffold_280670:678-685 + AAATATTT – AAATATTT
ENSMUSG00000059402_FRUB Orthologue Fugu rubripes chrUn:49,639,324-49,639,331 + AAATATTT – AAATATTT
ENSMUSG00000059402_GGAL Orthologue Gallus gallus chr5:2,414,325-2,414,332 – AAATATAT + ATATATTT
ENSMUSG00000059402_HSAP Orthologue Homo sapiens chr12:53,991,791-53,991,798 + AAATATTT – AAATATTT
ENSMUSG00000059402_LAFR Orthologue Loxodonta africana scaffold_12177:20,041-20,048 – AAATATAT + ATATATTT
ENSMUSG00000059402_MDOM Orthologue Monodelphis domestica scaffold_33:16,351,895-16,351,902 + AAATATTT – AAATATTT
ENSMUSG00000059402_PCAP Orthologue Procavia capensis ENSMUSG00000059402_PCAP:59-66 + AAATGTTT – AAACATTT
ENSMUSG00000059402_PTRO Orthologue Pan troglodytes chr10:55,251,835-55,251,842 + AAATATTT – AAATATTT
ENSMUSG00000059402_RNOR Orthologue Rattus norvegicus chr7:2,807,833-2,807,840 + AAATATTT – AAATATTT
ENSMUSG00000059402_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000059402_STRI:362-369 + ACATATTT – AAATATGT
ENSMUSG00000059402_XTRO Orthologue Xenopus tropicalis scaffold_10:4,837,934-4,837,941 + AAATATCT – AGATATTT

Questions or comments: cisred@bcgsc.ca