FILTERS:
pvalue:0.1
Motif craMmus408592
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus408592
Discovery p-value 2.79E-03
Motif location chr10: 128,583,301-128,583,310 (-) (10 bp)
Search region location chr10: 128,581,530-128,583,450 (-) (1,921 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 19 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Echinops telfairi, Fugu rubripes, Gallus gallus, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 7 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (6 annot.): S8(4.87E-06) ,    AIRE(5.17E-05) ,    HOXA5(1.45E-04) ,    IPF1(2.42E-04) ,    POU3F2(2.89E-04) ...
ORegAnno: (1 annot.): FoxA1(4.08E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATGsATTTCT AGAAATwCAT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 18 0 0 7 19 0 0 0 0 2
C 1 0 0 0 0 3 0 1 19 0
G 0 1 16 0 0 0 0 0 0 0
T 0 18 3 12 0 16 19 18 0 17
A T G n A T T T C T
1 2 3 4 5 6 7 8 9 10
A 17 0 18 19 16 0 12 3 18 0
C 0 0 0 0 0 0 0 16 1 0
G 0 19 1 0 3 0 0 0 0 1
T 2 0 0 0 0 19 7 0 0 18
A G A A A T n C A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000059762 Target Mus musculus chr10:128,583,301-128,583,310 + ATTAATTTCT – AGAAATTAAT
ENSMUSG00000059762_CFAM Orthologue Canis familiaris chr3:34,489,916-34,489,925 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_CJAC Orthologue Callithrix jacchus ENSMUSG00000059762_CJAC:246-255 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_CPOR Orthologue Cavia porcellus ENSMUSG00000059762_CPOR:469-478 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_DNOV Orthologue Dasypus novemcinctus scaffold_132779:3,075-3,084 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_ECAB Orthologue Equus caballus ENSMUSG00000059762_ECAB:323-332 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_ETEL Orthologue Echinops telfairi scaffold_228219:3,101-3,110 + ATGTACTTCT – AGAAGTACAT
ENSMUSG00000059762_FRUB Orthologue Fugu rubripes chrUn:56,753,325-56,753,334 + ATGTACTTCA – TGAAGTACAT
ENSMUSG00000059762_GGAL Orthologue Gallus gallus chr5:2,408,835-2,408,844 – ATTAATTTCA + TGAAATTAAT
ENSMUSG00000059762_LAFR Orthologue Loxodonta africana scaffold_9478:17,562-17,571 – ATGTATTTCT + AGAAATACAT
ENSMUSG00000059762_MDOM Orthologue Monodelphis domestica scaffold_33:16,099,300-16,099,309 – ATGAATTCCT + AGGAATTCAT
ENSMUSG00000059762_MMUL Orthologue Macaca mulatta SCAFFOLD65633:19,815-19,824 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_OCUN Orthologue Oryctolagus cuniculus scaffold_105846:5,022-5,031 – AGGAATTTCT + AGAAATTCCT
ENSMUSG00000059762_OGAR Orthologue Otolemur garnettii ENSMUSG00000059762_OGAR:262-271 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_PCAP Orthologue Procavia capensis ENSMUSG00000059762_PCAP:299-308 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_PPYG Orthologue Pongo pygmaeus ENSMUSG00000059762_PPYG:353-362 + ATGTATTTCT – AGAAATACAT
ENSMUSG00000059762_PTRO Orthologue Pan troglodytes chr10:55,464,422-55,464,431 – ATGAATTTCT + AGAAATTCAT
ENSMUSG00000059762_RNOR Orthologue Rattus norvegicus chr7:2,392,360-2,392,369 + ATTAATTTCT – AGAAATTAAT
ENSMUSG00000059762_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000059762_STRI:11-20 + CTGAACTTCT – AGAAGTTCAG

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