Motif craMmus417425
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This page describes one atomic motif in this cisRED database.
An atomic motif is a result returned by cisRED's motif discovery process
operating on an input sequence set. An input sequence set consists of a
search region sequence on the target genome (shown in the genome browser
view below) and corresponding sequences from other species. A motif consists
of a set of conserved sequences ('hits'). It can be represented by a
consensus sequence, a position frequency matrix and a sequence logo.
| Motif overview
|
| Atomic motif id |
craMmus417425 |
| Discovery p-value |
2.79E-03 |
| Motif location |
chr2: 87,374,515-87,374,524 (+)
(10 bp)
|
| Search region location |
chr2: 87,374,174-87,375,950 (+) (1,777 bp)
|
| Assembly |
Mouse, Ensembl v38 (NCBI m35)
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| Found in |
13 species:
Mus musculus,
Canis familiaris,
Cavia porcellus,
Dasypus novemcinctus,
Danio rerio,
Homo sapiens,
Loxodonta africana,
Monodelphis domestica,
Macaca mulatta,
Oryctolagus cuniculus,
Pan troglodytes,
Rattus norvegicus,
Spermophilus tridecemlineatus
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| Found with |
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| 'De Novo' motif group ID |
This motif was not submitted for clustering.
|
Similar to
(annotation p-value) |
There are
11 annotation(s)
with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (8 annot.):
E4BP4(1.95E-05)
,
POU2F1(4.30E-05)
,
POU2F1(1.36E-04)
,
TEF(1.36E-04)
,
HOXA5(2.02E-04)
...
ORegAnno: (3 annot.):
FoxA1(2.76E-04)
,
FoxA1(3.76E-04)
,
FoxA1(3.76E-04)
|
Modules
(Co-occurring motif patterns) |
Annotation-based:
No 'de novo' modules exist in this database.
|
Sequence Conservation
Sequence logo
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(+)motif |
(-)motif
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| Consensus sequence |
ATTTATATwT
|
AsATATAAAT
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| Position frequency matrix
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|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
13
|
4
|
0
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0
|
13
|
0
|
13
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4
|
6
|
4
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| C |
0
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0
|
1
|
0
|
0
|
4
|
0
|
0
|
0
|
0
|
| G |
0
|
0
|
0
|
0
|
0
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0
|
0
|
0
|
0
|
0
|
| T |
0
|
9
|
12
|
13
|
0
|
9
|
0
|
9
|
7
|
9
|
|
A
|
T
|
T
|
T
|
A
|
T
|
A
|
T
|
w
|
T
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|
|
1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
| A |
9
|
7
|
9
|
0
|
9
|
0
|
13
|
12
|
9
|
0
|
| C |
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
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| G |
0
|
0
|
0
|
0
|
4
|
0
|
0
|
1
|
0
|
0
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| T |
4
|
6
|
4
|
13
|
0
|
13
|
0
|
0
|
4
|
13
|
|
A
|
w
|
A
|
T
|
A
|
T
|
A
|
A
|
A
|
T
|
|
In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.
| Site Sequence Stack |
| Ensembl gene ID |
Type |
Species |
Position |
Std |
(+)Sequence |
Std |
(-)Sequence |
| ENSMUSG00000061520 |
Target |
Mus musculus |
chr2:87,374,515-87,374,524 |
+
|
ATTTACATAA |
–
|
TTATGTAAAT |
|
ENSMUSG00000061520_CFAM
|
Orthologue |
Canis familiaris |
chr18:43,068,919-43,068,928 |
– |
AATTATATTT |
+ |
AAATATAATT |
|
ENSMUSG00000061520_CPOR
|
Orthologue |
Cavia porcellus |
ENSMUSG00000061520_CPOR:271-280 |
+
|
ATTTATATTT |
–
|
AAATATAAAT |
|
ENSMUSG00000061520_DNOV
|
Orthologue |
Dasypus novemcinctus |
scaffold_18954:4,459-4,468 |
+
|
ATTTATAATA |
–
|
TATTATAAAT |
|
ENSMUSG00000061520_DRER
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Orthologue |
Danio rerio |
chr21:14,235,329-14,235,338 |
+
|
ATTTATATAT |
–
|
ATATATAAAT |
|
ENSMUSG00000061520_HSAP
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Orthologue |
Homo sapiens |
chr11:55,439,715-55,439,724 |
+
|
ATCTATATTA |
–
|
TAATATAGAT |
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ENSMUSG00000061520_LAFR
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Orthologue |
Loxodonta africana |
scaffold_13558:5,788-5,797 |
+
|
ATTTATAAAT |
–
|
ATTTATAAAT |
|
ENSMUSG00000061520_MDOM
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Orthologue |
Monodelphis domestica |
scaffold_33:17,366,531-17,366,540 |
+
|
AATTATAATT |
–
|
AATTATAATT |
|
ENSMUSG00000061520_MMUL
|
Orthologue |
Macaca mulatta |
SCAFFOLD115116:156,181-156,190 |
+
|
ATTTACATTT |
–
|
AAATGTAAAT |
|
ENSMUSG00000061520_OCUN
|
Orthologue |
Oryctolagus cuniculus |
scaffold_170859:2,002-2,011 |
– |
AATTACATAT |
+ |
ATATGTAATT |
|
ENSMUSG00000061520_PTRO
|
Orthologue |
Pan troglodytes |
9_random:27,082,152-27,082,161 |
+
|
ATTTATATTT |
–
|
AAATATAAAT |
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ENSMUSG00000061520_RNOR
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Orthologue |
Rattus norvegicus |
chr3:71,098,945-71,098,954 |
+
|
ATTTACATAA |
–
|
TTATGTAAAT |
|
ENSMUSG00000061520_STRI
|
Orthologue |
Spermophilus tridecemlineatus |
ENSMUSG00000061520_STRI:3-12 |
– |
AATTATAAAT |
+ |
ATTTATAATT |
