FILTERS:
pvalue:0.1
Motif craMmus418122
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus418122
Discovery p-value 2.79E-03
Motif location chrX: 11,725,617-11,725,632 (+) (16 bp)
Search region location chrX: 11,723,898-11,725,971 (+) (2,074 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 25 species: Mus musculus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Equus caballus, Erinaceus europaeus, Felis catus, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Macaca mulatta, Ovis aries, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 4 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (4 annot.): CUTL1(4.41E-05) ,    HTF(5.68E-05) ,    Pax-2(3.05E-04) ,    HOXA5(6.24E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TCTAATAACGyATGCw sGCATrCGTTATTAGA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 5 5 0 14 14 5 25 25 0 1 0 25 0 0 0 11
C 1 19 0 0 1 0 0 0 18 5 15 0 0 0 25 0
G 5 0 0 5 5 5 0 0 0 19 0 0 0 25 0 0
T 14 1 25 6 5 15 0 0 7 0 10 0 25 0 0 14
w C T r r w A A C G y A T G C w
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
A 14 0 0 25 0 10 0 7 0 0 15 5 6 25 1 14
C 0 0 25 0 0 0 19 0 0 0 5 5 5 0 0 5
G 0 25 0 0 0 15 5 18 0 0 0 1 0 0 19 1
T 11 0 0 0 25 0 1 0 25 25 5 14 14 0 5 5
w G C A T r C G T T m w w A G m

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000060628 Target Mus musculus chrX:11,725,617-11,725,632 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_CFAM Orthologue Canis familiaris chrX:35,722,705-35,722,720 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_CPOR Orthologue Cavia porcellus ENSMUSG00000060628_CPOR:1,105-1,120 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_DNOV Orthologue Dasypus novemcinctus scaffold_28058:3,277-3,292 + GCTTTGAATGTATGCA – TGCATACATTCAAAGC
ENSMUSG00000060628_ECAB Orthologue Equus caballus ENSMUSG00000060628_ECAB:1,923-1,938 – AATGGAAACCTATGCA + TGCATAGGTTTCCATT
ENSMUSG00000060628_EEUR Orthologue Erinaceus europaeus ENSMUSG00000060628_EEUR:893-908 – GCTTTGAATGTATGCA + TGCATACATTCAAAGC
ENSMUSG00000060628_FCAT Orthologue Felis catus ENSMUSG00000060628_FCAT:1,376-1,391 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_GGAL Orthologue Gallus gallus chr1:105,728,045-105,728,060 – TCTAATAACGCATGCT + AGCATGCGTTATTAGA
ENSMUSG00000060628_HSAP Orthologue Homo sapiens chrX:40,964,193-40,964,208 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_LAFR Orthologue Loxodonta africana scaffold_6969:2,102-2,117 – TCTAATAACGCATGCT + AGCATGCGTTATTAGA
ENSMUSG00000060628_MDOM Orthologue Monodelphis domestica scaffold_29:22,343,762-22,343,777 – TCTAATAACGCATGCT + AGCATGCGTTATTAGA
ENSMUSG00000060628_MEUG Orthologue Macropus eugenii ENSMUSG00000060628_MEUG:685-700 – GCTTTTAATATATGCA + TGCATATATTAAAAGC
ENSMUSG00000060628_MLUC Orthologue Myotis lucifugus ENSMUSG00000060628_MLUC:1,741-1,756 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_MMUL Orthologue Macaca mulatta SCAFFOLD60048:84,411-84,426 – AATGGAAACCTATGCA + TGCATAGGTTTCCATT
ENSMUSG00000060628_OARI Orthologue Ovis aries ENSMUSG00000060628_OARI:238-253 – AATGGAAACCCATGCA + TGCATGGGTTTCCATT
ENSMUSG00000060628_OCUN Orthologue Oryctolagus cuniculus scaffold_213972:29,315-29,330 + TCTAATAATGCATGCT – AGCATGCATTATTAGA
ENSMUSG00000060628_OGAR Orthologue Otolemur garnettii ENSMUSG00000060628_OGAR:1,774-1,789 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_PCAP Orthologue Procavia capensis ENSMUSG00000060628_PCAP:1,123-1,138 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_PPYG Orthologue Pongo pygmaeus ENSMUSG00000060628_PPYG:910-925 – GCTTTGAATGTATGCA + TGCATACATTCAAAGC
ENSMUSG00000060628_PTRO Orthologue Pan troglodytes chrX:42,259,813-42,259,828 + TCTAATAACGCATGCT – AGCATGCGTTATTAGA
ENSMUSG00000060628_RNOR Orthologue Rattus norvegicus chrX:21,549,951-21,549,966 – TCTAATAACGCATGCT + AGCATGCGTTATTAGA
ENSMUSG00000060628_SSCR Orthologue Sus scrofa ENSMUSG00000060628_SSCR:1,847-1,862 – AATGGAAACCTATGCA + TGCATAGGTTTCCATT
ENSMUSG00000060628_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000060628_STRI:875-890 – CTTTTGAATGTATGCA + TGCATACATTCAAAAG
ENSMUSG00000060628_TBEL Orthologue Tupaia belangeri ENSMUSG00000060628_TBEL:843-858 – GCTTCGAATGTATGCA + TGCATACATTCGAAGC
ENSMUSG00000060628_XTRO Orthologue Xenopus tropicalis scaffold_16:940,430-940,445 + AATGGAAACCTATGCA – TGCATAGGTTTCCATT

Questions or comments: cisred@bcgsc.ca