FILTERS:
pvalue:0.1
Motif craMmus421143
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus421143
Discovery p-value 2.79E-03
Motif location chr16: 59,252,754-59,252,763 (-) (10 bp)
Search region location chr16: 59,251,077-59,253,067 (-) (1,991 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 17 species: Mus musculus, Bos taurus, Canis familiaris, Dasypus novemcinctus, Echinops telfairi, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Oryctolagus cuniculus, Pan troglodytes, Rattus norvegicus, Spermophilus tridecemlineatus, Tetraodon nigroviridis, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 0 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (0 annot.): none
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules contain this motif.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AkATAkAsmA TkwTmTATmT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 17 2 12 0 17 0 17 6 8 16
C 0 0 0 0 0 0 0 0 6 0
G 0 9 5 0 0 11 0 0 3 0
T 0 6 0 17 0 6 0 11 0 1
A k A T A n A n m A
1 2 3 4 5 6 7 8 9 10
A 1 0 11 0 6 0 17 0 6 0
C 0 3 0 0 11 0 0 5 9 0
G 0 6 0 0 0 0 0 0 0 0
T 16 8 6 17 0 17 0 12 2 17
T k n T n T A T m T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000062942 Target Mus musculus chr16:59,252,754-59,252,763 + AGATATAACA – TGTTATATCT
ENSMUSG00000062942_BTAU Orthologue Bos taurus chr1:22,246,198-22,246,207 – AGGTAGATGA + TCATCTACCT
ENSMUSG00000062942_CFAM Orthologue Canis familiaris chr33:8,064,922-8,064,931 + ATATATATCA – TGATATATAT
ENSMUSG00000062942_DNOV Orthologue Dasypus novemcinctus scaffold_59996:3,563-3,572 + AGGTAGATCA – TGATCTACCT
ENSMUSG00000062942_ETEL Orthologue Echinops telfairi scaffold_224303:3,472-3,481 – AAATAGATAA + TTATCTATTT
ENSMUSG00000062942_GGAL Orthologue Gallus gallus chr5:44,157-44,166 – ATATAGATGA + TCATCTATAT
ENSMUSG00000062942_HSAP Orthologue Homo sapiens chr3:99,265,008-99,265,017 – AGATAGATAA + TTATCTATCT
ENSMUSG00000062942_LAFR Orthologue Loxodonta africana scaffold_5911:63,455-63,464 + AGGTAGATCA – TGATCTACCT
ENSMUSG00000062942_MDOM Orthologue Monodelphis domestica scaffold_25:18,986,494-18,986,503 + ATATATAAAA – TTTTATATAT
ENSMUSG00000062942_MEUG Orthologue Macropus eugenii ENSMUSG00000062942_MEUG:16-25 – ATATAGAAGA + TCTTCTATAT
ENSMUSG00000062942_MLUC Orthologue Myotis lucifugus ENSMUSG00000062942_MLUC:223-232 – AGATATAAAA + TTTTATATCT
ENSMUSG00000062942_OCUN Orthologue Oryctolagus cuniculus scaffold_72441:2,641-2,650 – AGATAGAAAA + TTTTCTATCT
ENSMUSG00000062942_PTRO Orthologue Pan troglodytes chr2:100,426,334-100,426,343 – AGATAGATAA + TTATCTATCT
ENSMUSG00000062942_RNOR Orthologue Rattus norvegicus chr11:41,895,847-41,895,856 – ATATATATCT + AGATATATAT
ENSMUSG00000062942_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000062942_STRI:345-354 – AGGTAGATCA + TGATCTACCT
ENSMUSG00000062942_TNIG Orthologue Tetraodon nigroviridis chr2:14,428,428-14,428,437 – ATGTAGAAAA + TTTTCTACAT
ENSMUSG00000062942_XTRO Orthologue Xenopus tropicalis scaffold_786:155,715-155,724 – AAATATATAA + TTATATATTT

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