FILTERS:
pvalue:0.1
Motif craMmus431567
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus431567
Discovery p-value 2.79E-03
Motif location chr19: 11,979,744-11,979,753 (-) (10 bp)
Search region location chr19: 11,979,054-11,980,809 (-) (1,756 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 12 species: Mus musculus, Bos taurus, Callithrix jacchus, Dasypus novemcinctus, Danio rerio, Fugu rubripes, Homo sapiens, Monodelphis domestica, Macaca mulatta, Pan troglodytes, Rattus norvegicus, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): Evi-1(6.99E-05) ,    Evi-1(1.51E-04) ,    Evi-1(2.03E-04) ,    FOXJ2(3.68E-04) ,    POU3F2(6.30E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TGATsATATs wATATwATCA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 2 12 4 7 12 0 10 0 5
C 0 0 0 0 0 0 0 0 0 0
G 0 7 0 0 0 0 0 2 0 0
T 12 3 0 8 5 0 12 0 12 7
T k A T w A T A T w
1 2 3 4 5 6 7 8 9 10
A 7 12 0 12 0 5 8 0 3 12
C 0 0 2 0 0 0 0 0 7 0
G 0 0 0 0 0 0 0 0 0 0
T 5 0 10 0 12 7 4 12 2 0
w A T A T w A T m A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000067513 Target Mus musculus chr19:11,979,744-11,979,753 + TGATAATATA – TATATTATCA
ENSMUSG00000067513_BTAU Orthologue Bos taurus chr1:22,221,932-22,221,941 – TGATTATATA + TATATAATCA
ENSMUSG00000067513_CJAC Orthologue Callithrix jacchus ENSMUSG00000067513_CJAC:303-312 – TTATTATATA + TATATAATAA
ENSMUSG00000067513_DNOV Orthologue Dasypus novemcinctus scaffold_3358:39,256-39,265 + TGAAAATGTA – TACATTTTCA
ENSMUSG00000067513_DRER Orthologue Danio rerio chr21:38,257,373-38,257,382 + TTAATATATT – AATATATTAA
ENSMUSG00000067513_FRUB Orthologue Fugu rubripes chrUn:198,145,028-198,145,037 + TTATTATGTT – AACATAATAA
ENSMUSG00000067513_HSAP Orthologue Homo sapiens chr11:58,887,596-58,887,605 – TGATAATATT + AATATTATCA
ENSMUSG00000067513_MDOM Orthologue Monodelphis domestica scaffold_33:17,978,335-17,978,344 + TGATAATATT – AATATTATCA
ENSMUSG00000067513_MMUL Orthologue Macaca mulatta SCAFFOLD50196:108,239-108,248 + TGATAATATT – AATATTATCA
ENSMUSG00000067513_PTRO Orthologue Pan troglodytes 9_random:28,066,111-28,066,120 + TAAAAATATT – AATATTTTTA
ENSMUSG00000067513_RNOR Orthologue Rattus norvegicus chr1:215,380,265-215,380,274 – TAATAATATT + AATATTATTA
ENSMUSG00000067513_XTRO Orthologue Xenopus tropicalis scaffold_94:2,291,020-2,291,029 – TGAATATATA + TATATATTCA

Questions or comments: cisred@bcgsc.ca