FILTERS:
pvalue:0.1
Motif craMmus437015
More information about this gene at Ensembl.org Go to UCSC
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Currently, this page only shows information about a motif if it:
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus437015
Discovery p-value 2.79E-03
Motif location chr10: 23,698,808-23,698,815 (+) (8 bp)
Search region location chr10: 23,698,678-23,700,684 (+) (2,007 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 26 species: Mus musculus, Bos taurus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Erinaceus europaeus, Echinops telfairi, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): POU2F1(2.25E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TGGATmTA TAkATCCA
Position frequency matrix
1 2 3 4 5 6 7 8
A 0 0 0 23 0 9 0 19
C 0 0 0 0 0 17 0 1
G 0 26 26 0 0 0 3 6
T 26 0 0 3 26 0 23 0
T G G A T n T A
1 2 3 4 5 6 7 8
A 0 23 0 26 3 0 0 26
C 6 3 0 0 0 26 26 0
G 1 0 17 0 0 0 0 0
T 19 0 9 0 23 0 0 0
T A n A T C C A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000069708 Target Mus musculus chr10:23,698,808-23,698,815 + TGGATATA – TATATCCA
ENSMUSG00000069708_BTAU Orthologue Bos taurus chr9:40,878,189-40,878,196 – TGGATCTA + TAGATCCA
ENSMUSG00000069708_CFAM Orthologue Canis familiaris chrUn:44,660,269-44,660,276 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_CPOR Orthologue Cavia porcellus ENSMUSG00000069708_CPOR:166-173 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_DNOV Orthologue Dasypus novemcinctus scaffold_11263:81,330-81,337 + TGGATCTG – CAGATCCA
ENSMUSG00000069708_DRER Orthologue Danio rerio chr20:52,740,524-52,740,531 + TGGATATG – CATATCCA
ENSMUSG00000069708_ECAB Orthologue Equus caballus ENSMUSG00000069708_ECAB:198-205 – TGGATAGA + TCTATCCA
ENSMUSG00000069708_EEUR Orthologue Erinaceus europaeus ENSMUSG00000069708_EEUR:801-808 + TGGTTATG – CATAACCA
ENSMUSG00000069708_ETEL Orthologue Echinops telfairi scaffold_321496:40,620-40,627 – TGGATATA + TATATCCA
ENSMUSG00000069708_HSAP Orthologue Homo sapiens chr6:132,972,100-132,972,107 – TGGATCTA + TAGATCCA
ENSMUSG00000069708_LAFR Orthologue Loxodonta africana scaffold_1654:42,031-42,038 + TGGATCTG – CAGATCCA
ENSMUSG00000069708_MDOM Orthologue Monodelphis domestica scaffold_0:78,703,599-78,703,606 – TGGATAGG + CCTATCCA
ENSMUSG00000069708_MLUC Orthologue Myotis lucifugus ENSMUSG00000069708_MLUC:209-216 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_MMUL Orthologue Macaca mulatta SCAFFOLD40010:25,280-25,287 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000069708_OANA:396-403 + TGGATATA – TATATCCA
ENSMUSG00000069708_OCUN Orthologue Oryctolagus cuniculus scaffold_207730:42,914-42,921 + TGGATAGA – TCTATCCA
ENSMUSG00000069708_OGAR Orthologue Otolemur garnettii ENSMUSG00000069708_OGAR:169-176 + TGGATCTG – CAGATCCA
ENSMUSG00000069708_PCAP Orthologue Procavia capensis ENSMUSG00000069708_PCAP:104-111 + TGGATCTC – GAGATCCA
ENSMUSG00000069708_PPYG Orthologue Pongo pygmaeus ENSMUSG00000069708_PPYG:197-204 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_PTRO Orthologue Pan troglodytes chr5:135,616,991-135,616,998 – TGGATCTA + TAGATCCA
ENSMUSG00000069708_RNOR Orthologue Rattus norvegicus chr1:22,022,571-22,022,578 – TGGATCTA + TAGATCCA
ENSMUSG00000069708_SARA Orthologue Sorex araneus ENSMUSG00000069708_SARA:160-167 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_SSCR Orthologue Sus scrofa ENSMUSG00000069708_SSCR:215-222 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000069708_STRI:169-176 + TGGATCTA – TAGATCCA
ENSMUSG00000069708_TBEL Orthologue Tupaia belangeri ENSMUSG00000069708_TBEL:322-329 + TGGTTATA – TATAACCA
ENSMUSG00000069708_TNIG Orthologue Tetraodon nigroviridis Un_random:105,528,505-105,528,512 – TGGTTCTA + TAGAACCA

Questions or comments: cisred@bcgsc.ca