FILTERS:
pvalue:0.1
Motif craMmus446408
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus446408
Discovery p-value 2.79E-03
Motif location chr16: 58,698,812-58,698,817 (-) (6 bp)
Search region location chr16: 58,697,133-58,699,532 (-) (2,400 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 16 species: Mus musculus, Bos taurus, Canis familiaris, Cavia porcellus, Dasypus novemcinctus, Echinops telfairi, Fugu rubripes, Gallus gallus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Pan troglodytes, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 5 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (5 annot.): COMP1(1.70E-04) ,    Chx10(4.56E-04) ,    Lmo2(5.35E-04) ,    C-EBPgamma(7.47E-04) ,    POU3F1(7.49E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATAATT AATTAT
Position frequency matrix
1 2 3 4 5 6
A 16 0 15 16 0 0
C 0 0 0 0 0 0
G 0 0 1 0 0 0
T 0 16 0 0 16 16
A T A A T T
1 2 3 4 5 6
A 16 16 0 0 16 0
C 0 0 0 1 0 0
G 0 0 0 0 0 0
T 0 0 16 15 0 16
A A T T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000071510 Target Mus musculus chr16:58,698,812-58,698,817 + ATAATT – AATTAT
ENSMUSG00000071510_BTAU Orthologue Bos taurus chr1:22,332,933-22,332,938 + ATAATT – AATTAT
ENSMUSG00000071510_CFAM Orthologue Canis familiaris chr33:8,317,131-8,317,136 + ATAATT – AATTAT
ENSMUSG00000071510_CPOR Orthologue Cavia porcellus ENSMUSG00000071510_CPOR:166-171 + ATGATT – AATCAT
ENSMUSG00000071510_DNOV Orthologue Dasypus novemcinctus scaffold_61315:4,602-4,607 – ATAATT + AATTAT
ENSMUSG00000071510_ETEL Orthologue Echinops telfairi scaffold_167783:7,029-7,034 + ATAATT – AATTAT
ENSMUSG00000071510_FRUB Orthologue Fugu rubripes chrUn:265,470,125-265,470,130 + ATAATT – AATTAT
ENSMUSG00000071510_GGAL Orthologue Gallus gallus chr5:2,401,568-2,401,573 – ATAATT + AATTAT
ENSMUSG00000071510_HSAP Orthologue Homo sapiens chr3:99,697,687-99,697,692 + ATAATT – AATTAT
ENSMUSG00000071510_LAFR Orthologue Loxodonta africana scaffold_10630:36,049-36,054 + ATAATT – AATTAT
ENSMUSG00000071510_MDOM Orthologue Monodelphis domestica scaffold_33:18,972,376-18,972,381 + ATAATT – AATTAT
ENSMUSG00000071510_MLUC Orthologue Myotis lucifugus ENSMUSG00000071510_MLUC:196-201 – ATAATT + AATTAT
ENSMUSG00000071510_MMUL Orthologue Macaca mulatta SCAFFOLD10814:28,318-28,323 – ATAATT + AATTAT
ENSMUSG00000071510_OCUN Orthologue Oryctolagus cuniculus scaffold_206346:35,532-35,537 – ATAATT + AATTAT
ENSMUSG00000071510_PTRO Orthologue Pan troglodytes chr2:100,883,906-100,883,911 + ATAATT – AATTAT
ENSMUSG00000071510_TNIG Orthologue Tetraodon nigroviridis chr2:14,428,028-14,428,033 + ATAATT – AATTAT

Questions or comments: cisred@bcgsc.ca