FILTERS:
pvalue:0.1
Motif craMmus48760
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus48760
Discovery p-value 9.88E-04
Motif location chr2: 106,234,605-106,234,610 (+) (6 bp)
Search region location chr2: 106,232,877-106,234,666 (+) (1,790 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 16 species: Mus musculus, Canis familiaris, Dasypus novemcinctus, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): HOXA5(1.90E-04) ,    Chx10(4.56E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TAAATT AATTTA
Position frequency matrix
1 2 3 4 5 6
A 0 16 16 16 0 0
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 16 0 0 0 16 16
T A A A T T
1 2 3 4 5 6
A 16 16 0 0 0 16
C 0 0 0 0 0 0
G 0 0 0 0 0 0
T 0 0 16 16 16 0
A A T T T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000042649 Target Mus musculus chr2:106,234,605-106,234,610 + TAAATT – AATTTA
ENSMUSG00000042649_CFAM Orthologue Canis familiaris chr18:39,511,155-39,511,160 – TAAATT + AATTTA
ENSMUSG00000042649_DNOV Orthologue Dasypus novemcinctus scaffold_6300:49,638-49,643 – TAAATT + AATTTA
ENSMUSG00000042649_ETEL Orthologue Echinops telfairi scaffold_319434:68,761-68,766 – TAAATT + AATTTA
ENSMUSG00000042649_FCAT Orthologue Felis catus ENSMUSG00000042649_FCAT:155-160 – TAAATT + AATTTA
ENSMUSG00000042649_HSAP Orthologue Homo sapiens chr11:30,873,976-30,873,981 – TAAATT + AATTTA
ENSMUSG00000042649_LAFR Orthologue Loxodonta africana scaffold_285:117,066-117,071 – TAAATT + AATTTA
ENSMUSG00000042649_MDOM Orthologue Monodelphis domestica scaffold_10:76,882,494-76,882,499 + TAAATT – AATTTA
ENSMUSG00000042649_MLUC Orthologue Myotis lucifugus ENSMUSG00000042649_MLUC:438-443 + TAAATT – AATTTA
ENSMUSG00000042649_MMUL Orthologue Macaca mulatta SCAFFOLD25083:161,047-161,052 + TAAATT – AATTTA
ENSMUSG00000042649_OCUN Orthologue Oryctolagus cuniculus scaffold_200560:165,269-165,274 – TAAATT + AATTTA
ENSMUSG00000042649_OGAR Orthologue Otolemur garnettii ENSMUSG00000042649_OGAR:469-474 + TAAATT – AATTTA
ENSMUSG00000042649_PCAP Orthologue Procavia capensis ENSMUSG00000042649_PCAP:361-366 + TAAATT – AATTTA
ENSMUSG00000042649_PPYG Orthologue Pongo pygmaeus ENSMUSG00000042649_PPYG:145-150 + TAAATT – AATTTA
ENSMUSG00000042649_PTRO Orthologue Pan troglodytes chr9:31,223,002-31,223,007 – TAAATT + AATTTA
ENSMUSG00000042649_RNOR Orthologue Rattus norvegicus chr3:91,774,739-91,774,744 + TAAATT – AATTTA

Questions or comments: cisred@bcgsc.ca