FILTERS:
pvalue:0.1
Motif craMmus69086
More information about this gene at Ensembl.org Go to UCSC
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+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus69086
Discovery p-value 2.79E-03
Motif location chr11: 101,476,532-101,476,543 (+) (12 bp)
Search region location chr11: 101,474,501-101,476,954 (+) (2,454 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 18 species: Mus musculus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Equus caballus, Echinops telfairi, Felis catus, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 9 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (7 annot.): HNF-1alpha(4.58E-06) ,    HNF-1alpha(4.67E-05) ,    COMP1(1.74E-04) ,    IPF1(3.50E-04) ,    HNF-3(5.90E-04) ...
ORegAnno: (2 annot.): FoxA1(7.75E-05) ,    FoxA1(4.25E-04)
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence AAGTTAATmATT AATkATTAACTT
Position frequency matrix
1 2 3 4 5 6 7 8 9 10 11 12
A 18 13 0 0 0 18 18 0 8 18 0 0
C 0 0 0 0 0 0 0 0 9 0 0 0
G 0 5 18 0 0 0 0 0 1 0 0 0
T 0 0 0 18 18 0 0 18 0 0 18 18
A A G T T A A T m A T T
1 2 3 4 5 6 7 8 9 10 11 12
A 18 18 0 0 18 0 0 18 18 0 0 0
C 0 0 0 1 0 0 0 0 0 18 5 0
G 0 0 0 9 0 0 0 0 0 0 0 0
T 0 0 18 8 0 18 18 0 0 0 13 18
A A T k A T T A A C T T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000019325 Target Mus musculus chr11:101,476,532-101,476,543 + AAGTTAATAATT – AATTATTAACTT
ENSMUSG00000019325_CFAM Orthologue Canis familiaris chr9:23,461,718-23,461,729 – AAGTTAATCATT + AATGATTAACTT
ENSMUSG00000019325_CJAC Orthologue Callithrix jacchus ENSMUSG00000019325_CJAC:3-14 + AAGTTAATCATT – AATGATTAACTT
ENSMUSG00000019325_CPOR Orthologue Cavia porcellus ENSMUSG00000019325_CPOR:91-102 + AGGTTAATGATT – AATCATTAACCT
ENSMUSG00000019325_ECAB Orthologue Equus caballus ENSMUSG00000019325_ECAB:210-221 + AGGTTAATAATT – AATTATTAACCT
ENSMUSG00000019325_ETEL Orthologue Echinops telfairi scaffold_320735:44,719-44,730 – AAGTTAATCATT + AATGATTAACTT
ENSMUSG00000019325_FCAT Orthologue Felis catus ENSMUSG00000019325_FCAT:302-313 + AAGTTAATCATT – AATGATTAACTT
ENSMUSG00000019325_HSAP Orthologue Homo sapiens chr17:38,306,114-38,306,125 + AAGTTAATCATT – AATGATTAACTT
ENSMUSG00000019325_LAFR Orthologue Loxodonta africana scaffold_16683:3,943-3,954 + AAGTTAATAATT – AATTATTAACTT
ENSMUSG00000019325_MDOM Orthologue Monodelphis domestica scaffold_18:53,440,514-53,440,525 + AGGTTAATAATT – AATTATTAACCT
ENSMUSG00000019325_MMUL Orthologue Macaca mulatta SCAFFOLD1408:4,129-4,140 + AAGTTAATCATT – AATGATTAACTT
ENSMUSG00000019325_OCUN Orthologue Oryctolagus cuniculus scaffold_197065:117,285-117,296 + AGGTTAATCATT – AATGATTAACCT
ENSMUSG00000019325_OGAR Orthologue Otolemur garnettii ENSMUSG00000019325_OGAR:206-217 + AAGTTAATAATT – AATTATTAACTT
ENSMUSG00000019325_PCAP Orthologue Procavia capensis ENSMUSG00000019325_PCAP:371-382 + AAGTTAATAATT – AATTATTAACTT
ENSMUSG00000019325_PTRO Orthologue Pan troglodytes chr19:41,492,995-41,493,006 + AAGTTAATCATT – AATGATTAACTT
ENSMUSG00000019325_RNOR Orthologue Rattus norvegicus chr10:90,407,665-90,407,676 + AAGTTAATAATT – AATTATTAACTT
ENSMUSG00000019325_SARA Orthologue Sorex araneus ENSMUSG00000019325_SARA:128-139 + AGGTTAATCATT – AATGATTAACCT
ENSMUSG00000019325_SSCR Orthologue Sus scrofa ENSMUSG00000019325_SSCR:205-216 + AAGTTAATAATT – AATTATTAACTT

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