FILTERS:
pvalue:0.1
Motif craMmus83883
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus83883
Discovery p-value 2.79E-03
Motif location chr12: 81,483,704-81,483,713 (-) (10 bp)
Search region location chr12: 81,483,554-81,485,253 (-) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 29 species: Mus musculus, Bos taurus, Canis familiaris, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Erinaceus europaeus, Felis catus, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Macropus eugenii, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Sus scrofa, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 2 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (2 annot.): POU2F1(1.01E-05) ,    Nkx3-1(6.13E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TCTTACTTAC GTAAGTAAGA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 3 6 0 0 26 3 0 0 29 0
C 0 23 0 0 0 26 0 0 0 26
G 0 0 4 0 0 0 0 0 0 3
T 26 0 25 29 3 0 29 29 0 0
T C T T A C T T A C
1 2 3 4 5 6 7 8 9 10
A 0 0 29 29 0 3 29 25 0 26
C 3 0 0 0 0 0 0 4 0 0
G 26 0 0 0 26 0 0 0 23 0
T 0 29 0 0 3 26 0 0 6 3
G T A A G T A A G A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000021221 Target Mus musculus chr12:81,483,704-81,483,713 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_BTAU Orthologue Bos taurus chr10:59,415,485-59,415,494 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_CFAM Orthologue Canis familiaris chr8:49,314,085-49,314,094 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_CJAC Orthologue Callithrix jacchus ENSMUSG00000021221_CJAC:1,498-1,507 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_CPOR Orthologue Cavia porcellus ENSMUSG00000021221_CPOR:670-679 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_DNOV Orthologue Dasypus novemcinctus scaffold_4551:13,008-13,017 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_DRER Orthologue Danio rerio chr20:38,354,066-38,354,075 + AATTACTTAC – GTAAGTAATT
ENSMUSG00000021221_ECAB Orthologue Equus caballus ENSMUSG00000021221_ECAB:736-745 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_EEUR Orthologue Erinaceus europaeus ENSMUSG00000021221_EEUR:643-652 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_FCAT Orthologue Felis catus ENSMUSG00000021221_FCAT:755-764 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_FRUB Orthologue Fugu rubripes chrUn:116,996,855-116,996,864 – AATTACTTAC + GTAAGTAATT
ENSMUSG00000021221_HSAP Orthologue Homo sapiens chr14:72,430,508-72,430,517 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_LAFR Orthologue Loxodonta africana scaffold_28890:28,823-28,832 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_MDOM Orthologue Monodelphis domestica scaffold_8:62,388,979-62,388,988 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_MEUG Orthologue Macropus eugenii ENSMUSG00000021221_MEUG:657-666 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_MLUC Orthologue Myotis lucifugus ENSMUSG00000021221_MLUC:730-739 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_MMUL Orthologue Macaca mulatta SCAFFOLD75492:54,707-54,716 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000021221_OANA:209-218 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_OCUN Orthologue Oryctolagus cuniculus scaffold_212327:105,347-105,356 + TCGTACTTAC – GTAAGTACGA
ENSMUSG00000021221_OGAR Orthologue Otolemur garnettii ENSMUSG00000021221_OGAR:551-560 – TAGTTATTAG + CTAATAACTA
ENSMUSG00000021221_PCAP Orthologue Procavia capensis ENSMUSG00000021221_PCAP:814-823 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_PPYG Orthologue Pongo pygmaeus ENSMUSG00000021221_PPYG:1,292-1,301 – TAGTTATTAG + CTAATAACTA
ENSMUSG00000021221_PTRO Orthologue Pan troglodytes chr15:72,206,903-72,206,912 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_RNOR Orthologue Rattus norvegicus chr6:107,444,489-107,444,498 + TCTTACTTAC – GTAAGTAAGA
ENSMUSG00000021221_SARA Orthologue Sorex araneus ENSMUSG00000021221_SARA:283-292 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_SSCR Orthologue Sus scrofa ENSMUSG00000021221_SSCR:681-690 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000021221_STRI:1,107-1,116 – TCTTACTTAC + GTAAGTAAGA
ENSMUSG00000021221_TBEL Orthologue Tupaia belangeri ENSMUSG00000021221_TBEL:1,323-1,332 – TAGTTATTAG + CTAATAACTA
ENSMUSG00000021221_TNIG Orthologue Tetraodon nigroviridis chr10:4,366,790-4,366,799 + AATTACTTAC – GTAAGTAATT

Questions or comments: cisred@bcgsc.ca