FILTERS:
pvalue:0.1
Motif craMmus85073
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus85073
Discovery p-value 2.79E-03
Motif location chr13: 91,938,714-91,938,721 (+) (8 bp)
Search region location chr13: 91,937,173-91,938,872 (+) (1,700 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 29 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Erinaceus europaeus, Echinops telfairi, Felis catus, Fugu rubripes, Homo sapiens, Loxodonta africana, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Ovis aries, Oryctolagus cuniculus, Procavia capensis, Pongo pygmaeus, Pan troglodytes, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri, Tetraodon nigroviridis, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 8 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (8 annot.): aMEF-2(2.70E-05) ,    RSRFC4(6.99E-05) ,    RSRFC4(8.15E-05) ,    aMEF-2(2.67E-04) ,    TEF(4.52E-04) ...
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence ATATmTAT ATAkATAT
Position frequency matrix
1 2 3 4 5 6 7 8
A 29 4 29 0 17 0 29 0
C 0 0 0 0 12 0 0 0
G 0 0 0 0 0 0 0 0
T 0 25 0 29 0 29 0 29
A T A T m T A T
1 2 3 4 5 6 7 8
A 29 0 29 0 29 0 25 0
C 0 0 0 0 0 0 0 0
G 0 0 0 12 0 0 0 0
T 0 29 0 17 0 29 4 29
A T A k A T A T

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000021685 Target Mus musculus chr13:91,938,714-91,938,721 + ATATATAT – ATATATAT
ENSMUSG00000021685_BTAU Orthologue Bos taurus chr10:2,680,975-2,680,982 – ATATATAT + ATATATAT
ENSMUSG00000021685_CFAM Orthologue Canis familiaris chr3:31,950,973-31,950,980 + ATATATAT – ATATATAT
ENSMUSG00000021685_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000021685_CHOF:119-126 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_CJAC Orthologue Callithrix jacchus ENSMUSG00000021685_CJAC:1,563-1,570 + ATATATAT – ATATATAT
ENSMUSG00000021685_CPOR Orthologue Cavia porcellus ENSMUSG00000021685_CPOR:257-264 – ATATATAT + ATATATAT
ENSMUSG00000021685_DNOV Orthologue Dasypus novemcinctus scaffold_7380:23,912-23,919 – ATATATAT + ATATATAT
ENSMUSG00000021685_DRER Orthologue Danio rerio chr16:46,532,936-46,532,943 – ATATATAT + ATATATAT
ENSMUSG00000021685_EEUR Orthologue Erinaceus europaeus ENSMUSG00000021685_EEUR:1,606-1,613 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_ETEL Orthologue Echinops telfairi scaffold_306948:14,021-14,028 – ATATATAT + ATATATAT
ENSMUSG00000021685_FCAT Orthologue Felis catus ENSMUSG00000021685_FCAT:1,603-1,610 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_FRUB Orthologue Fugu rubripes chrUn:221,352,307-221,352,314 + ATATATAT – ATATATAT
ENSMUSG00000021685_HSAP Orthologue Homo sapiens chr5:76,971,307-76,971,314 + AAATCTAT – ATAGATTT
ENSMUSG00000021685_LAFR Orthologue Loxodonta africana scaffold_48748:8,084-8,091 + ATATATAT – ATATATAT
ENSMUSG00000021685_MDOM Orthologue Monodelphis domestica scaffold_27:38,892,565-38,892,572 + ATATATAT – ATATATAT
ENSMUSG00000021685_MLUC Orthologue Myotis lucifugus ENSMUSG00000021685_MLUC:1,594-1,601 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_MMUL Orthologue Macaca mulatta SCAFFOLD55579:13,937-13,944 + ATATATAT – ATATATAT
ENSMUSG00000021685_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000021685_OANA:498-505 + AAATATAT – ATATATTT
ENSMUSG00000021685_OARI Orthologue Ovis aries ENSMUSG00000021685_OARI:198-205 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_OCUN Orthologue Oryctolagus cuniculus scaffold_206511:56,114-56,121 – ATATATAT + ATATATAT
ENSMUSG00000021685_PCAP Orthologue Procavia capensis ENSMUSG00000021685_PCAP:495-502 + AAATATAT – ATATATTT
ENSMUSG00000021685_PPYG Orthologue Pongo pygmaeus ENSMUSG00000021685_PPYG:1,604-1,611 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_PTRO Orthologue Pan troglodytes chr4:38,442,031-38,442,038 – AAATCTAT + ATAGATTT
ENSMUSG00000021685_RNOR Orthologue Rattus norvegicus chr2:25,097,009-25,097,016 + ATATATAT – ATATATAT
ENSMUSG00000021685_SARA Orthologue Sorex araneus ENSMUSG00000021685_SARA:1,608-1,615 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000021685_STRI:1,593-1,600 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_TBEL Orthologue Tupaia belangeri ENSMUSG00000021685_TBEL:1,609-1,616 + ATATCTAT – ATAGATAT
ENSMUSG00000021685_TNIG Orthologue Tetraodon nigroviridis Un_random:1,620,678-1,620,685 – ATATATAT + ATATATAT
ENSMUSG00000021685_XTRO Orthologue Xenopus tropicalis scaffold_818:153,313-153,320 + ATATCTAT – ATAGATAT

Questions or comments: cisred@bcgsc.ca