FILTERS:
pvalue:0.1
Motif craMmus89087
More information about this gene at Ensembl.org Go to UCSC
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus89087
Discovery p-value 4.79E-02
Motif location chr15: 39,118,048-39,118,057 (+) (10 bp)
Search region location chr15: 39,116,699-39,118,582 (+) (1,884 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 18 species: Mus musculus, Canis familiaris, Cavia porcellus, Erinaceus europaeus, Echinops telfairi, Felis catus, Gallus gallus, Homo sapiens, Monodelphis domestica, Myotis lucifugus, Macaca mulatta, Oryctolagus cuniculus, Otolemur garnettii, Pan troglodytes, Rattus norvegicus, Sorex araneus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 0 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (0 annot.): none
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 No annotation-based modules contain this motif.
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TGsACTTwCA TGsAAGTwCA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 0 0 18 6 0 0 7 0 18
C 0 0 7 0 12 5 2 0 18 0
G 0 14 11 0 0 0 0 3 0 0
T 18 4 0 0 0 13 16 8 0 0
T G n A C T T w C A
1 2 3 4 5 6 7 8 9 10
A 0 0 8 16 13 0 0 0 4 18
C 0 0 3 0 0 0 0 11 14 0
G 0 18 0 2 5 12 0 7 0 0
T 18 0 7 0 0 6 18 0 0 0
T G w A A G T n C A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000022300 Target Mus musculus chr15:39,118,048-39,118,057 + TGGAACCGCA – TGCGGTTCCA
ENSMUSG00000022300_CFAM Orthologue Canis familiaris chr13:7,856,957-7,856,966 + TGGACTTACA – TGTAAGTCCA
ENSMUSG00000022300_CPOR Orthologue Cavia porcellus ENSMUSG00000022300_CPOR:742-751 + TGGACTTGCA – TGCAAGTCCA
ENSMUSG00000022300_EEUR Orthologue Erinaceus europaeus ENSMUSG00000022300_EEUR:750-759 + TGGACTTACA – TGTAAGTCCA
ENSMUSG00000022300_ETEL Orthologue Echinops telfairi scaffold_324940:51,186-51,195 + TTCACCTTCA – TGAAGGTGAA
ENSMUSG00000022300_FCAT Orthologue Felis catus ENSMUSG00000022300_FCAT:888-897 + TGGACTTACA – TGTAAGTCCA
ENSMUSG00000022300_GGAL Orthologue Gallus gallus chr2:128,147,158-128,147,167 – TTCAATCTCA + TGAGATTGAA
ENSMUSG00000022300_HSAP Orthologue Homo sapiens chr8:104,495,545-104,495,554 + TGCAATTTCA – TGAAATTGCA
ENSMUSG00000022300_MDOM Orthologue Monodelphis domestica scaffold_3:59,085,536-59,085,545 – TGGACCTTCA + TGAAGGTCCA
ENSMUSG00000022300_MLUC Orthologue Myotis lucifugus ENSMUSG00000022300_MLUC:884-893 + TGGACTTGCA – TGCAAGTCCA
ENSMUSG00000022300_MMUL Orthologue Macaca mulatta SCAFFOLD115030:199,948-199,957 + TGCAATTTCA – TGAAATTGCA
ENSMUSG00000022300_OCUN Orthologue Oryctolagus cuniculus scaffold_205394:13,610-13,619 – TGGACTTACA + TGTAAGTCCA
ENSMUSG00000022300_OGAR Orthologue Otolemur garnettii ENSMUSG00000022300_OGAR:882-891 + TGGACTTACA – TGTAAGTCCA
ENSMUSG00000022300_PTRO Orthologue Pan troglodytes chr7:106,889,927-106,889,936 + TGCAATTTCA – TGAAATTGCA
ENSMUSG00000022300_RNOR Orthologue Rattus norvegicus chr7:74,688,422-74,688,431 + TGCACTTTCA – TGAAAGTGCA
ENSMUSG00000022300_SARA Orthologue Sorex araneus ENSMUSG00000022300_SARA:586-595 + TGGACTTACA – TGTAAGTCCA
ENSMUSG00000022300_TBEL Orthologue Tupaia belangeri ENSMUSG00000022300_TBEL:693-702 – TTCACCTTCA + TGAAGGTGAA
ENSMUSG00000022300_XTRO Orthologue Xenopus tropicalis scaffold_3:5,267,271-5,267,280 – TTGAACTACA + TGTAGTTCAA

Questions or comments: cisred@bcgsc.ca