FILTERS:
pvalue:0.1
Motif craMmus90630
More information about this gene at Ensembl.org Go to UCSC
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+ has a discovery p-value < 0.1
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This page describes one atomic motif in this cisRED database. An atomic motif is a result returned by cisRED's motif discovery process operating on an input sequence set. An input sequence set consists of a search region sequence on the target genome (shown in the genome browser view below) and corresponding sequences from other species. A motif consists of a set of conserved sequences ('hits'). It can be represented by a consensus sequence, a position frequency matrix and a sequence logo.

Page Contents

Overview
Sequence Conservation
Motif overview
Atomic motif id craMmus90630
Discovery p-value 2.79E-03
Motif location chr15: 103,004,902-103,004,911 (+) (10 bp)
Search region location chr15: 103,003,490-103,005,291 (+) (1,802 bp)
Assembly Mouse, Ensembl v38 (NCBI m35)
Found in 24 species: Mus musculus, Bos taurus, Canis familiaris, Choloepus hoffmanni, Callithrix jacchus, Cavia porcellus, Dasypus novemcinctus, Danio rerio, Equus caballus, Erinaceus europaeus, Felis catus, Homo sapiens, Myotis lucifugus, Macaca mulatta, Ornithorhynchus anatinus, Oryctolagus cuniculus, Otolemur garnettii, Procavia capensis, Pan troglodytes, Rattus norvegicus, Sorex araneus, Spermophilus tridecemlineatus, Tupaia belangeri, Xenopus tropicalis
Found with
'De Novo' motif group ID This motif was not submitted for clustering.
Similar to
(annotation p-value)		 There are 1 annotation(s) with p-values below 0.001.
JASPAR: (0 annot.): none
TRANSFAC: (1 annot.): POU2F1(1.29E-04)
ORegAnno: (0 annot.): none
Modules
(Co-occurring motif patterns)		 Annotation-based:
No 'de novo' modules exist in this database.

Sequence Conservation
Sequence logo (+)motif (-)motif
Consensus sequence TATGTkAATT AATTmACATA
Position frequency matrix
1 2 3 4 5 6 7 8 9 10
A 0 24 6 1 0 0 23 24 0 1
C 0 0 0 0 0 0 0 0 1 1
G 0 0 0 21 0 15 0 0 0 0
T 24 0 18 2 24 9 1 0 23 22
T A T G T n A A T T
1 2 3 4 5 6 7 8 9 10
A 22 23 0 1 9 24 2 18 0 24
C 0 0 0 0 15 0 21 0 0 0
G 1 1 0 0 0 0 0 0 0 0
T 1 0 24 23 0 0 1 6 24 0
A A T T n A C A T A

In the table below, bases highlighted on the Target sequence will link to a single nucleotide polymoprhism in NCBI's dbSNP.

Site Sequence Stack
Ensembl gene ID Type Species Position Std (+)Sequence Std (-)Sequence
ENSMUSG00000022486 Target Mus musculus chr15:103,004,902-103,004,911 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_BTAU Orthologue Bos taurus chr5:16,746,391-16,746,400 – TATGTGAATT + AATTCACATA
ENSMUSG00000022486_CFAM Orthologue Canis familiaris chr27:4,228,067-4,228,076 – TATGTGAATT + AATTCACATA
ENSMUSG00000022486_CHOF Orthologue Choloepus hoffmanni ENSMUSG00000022486_CHOF:148-157 + TAAGTTAATT – AATTAACTTA
ENSMUSG00000022486_CJAC Orthologue Callithrix jacchus ENSMUSG00000022486_CJAC:420-429 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_CPOR Orthologue Cavia porcellus ENSMUSG00000022486_CPOR:32-41 + TATTTTAATT – AATTAAAATA
ENSMUSG00000022486_DNOV Orthologue Dasypus novemcinctus scaffold_4404:71,389-71,398 – TATGTGAATT + AATTCACATA
ENSMUSG00000022486_DRER Orthologue Danio rerio chr23:49,576,484-49,576,493 + TAAGTTAATA – TATTAACTTA
ENSMUSG00000022486_ECAB Orthologue Equus caballus ENSMUSG00000022486_ECAB:1,436-1,445 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_EEUR Orthologue Erinaceus europaeus ENSMUSG00000022486_EEUR:1,378-1,387 + TAAGTTAATT – AATTAACTTA
ENSMUSG00000022486_FCAT Orthologue Felis catus ENSMUSG00000022486_FCAT:1,426-1,435 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_HSAP Orthologue Homo sapiens chr12:52,717,770-52,717,779 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_MLUC Orthologue Myotis lucifugus ENSMUSG00000022486_MLUC:1,517-1,526 + TAAGTTAATT – AATTAACTTA
ENSMUSG00000022486_MMUL Orthologue Macaca mulatta SCAFFOLD26175:51,188-51,197 – TATGTGAATT + AATTCACATA
ENSMUSG00000022486_OANA Orthologue Ornithorhynchus anatinus ENSMUSG00000022486_OANA:118-127 + TATATTTACC – GGTAAATATA
ENSMUSG00000022486_OCUN Orthologue Oryctolagus cuniculus scaffold_213805:375-384 + TAAGTTAATT – AATTAACTTA
ENSMUSG00000022486_OGAR Orthologue Otolemur garnettii ENSMUSG00000022486_OGAR:1,455-1,464 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_PCAP Orthologue Procavia capensis ENSMUSG00000022486_PCAP:1,448-1,457 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_PTRO Orthologue Pan troglodytes chr10:53,966,730-53,966,739 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_RNOR Orthologue Rattus norvegicus chr7:141,861,132-141,861,141 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_SARA Orthologue Sorex araneus ENSMUSG00000022486_SARA:210-219 + TAAGTTAATT – AATTAACTTA
ENSMUSG00000022486_STRI Orthologue Spermophilus tridecemlineatus ENSMUSG00000022486_STRI:130-139 + TATTTTAATT – AATTAAAATA
ENSMUSG00000022486_TBEL Orthologue Tupaia belangeri ENSMUSG00000022486_TBEL:1,437-1,446 + TATGTGAATT – AATTCACATA
ENSMUSG00000022486_XTRO Orthologue Xenopus tropicalis scaffold_280:444,533-444,542 + TATGTGAATT – AATTCACATA

Questions or comments: cisred@bcgsc.ca