Human 9
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pvalue:0.1
cisRED > Human 9
Search by Symbol
Search for any of the following:
- Ensembl gene IDs (e.g. ENSG00000000003)
- gene symbols (e.g. NP_997318.1, SRY)
- cisRED motif IDs (e.g. craHsap1)
- cisRED group IDs (e.g. crtHsap40033)
- cisRED module IDs (e.g. crmHsap1)
Search by Sequence
Find motif sequences on either strand that contain an IUPAC query sequence, e.g. TAARNGCMT.
Search Groups & Modules
Find
groups
associated with at least one of these JASPAR, TRANSFAC or ORegAnno models:
120-kDa_CRE-binding_proteinAFP1AIREALF1AAML-1AML1AML3ANF-2AP-1AP-2AP-2alphaAAP-4ARATFATF-1ATF3ATF4ATF6AhRAlx-4AndrogenB-MybBHLHB2Bach1BrachyuryBsapC-EBPalphaC-EBPbetaC-EBPdeltaC-EBPgammaCAC-binding_proteinCACCC-binding_factorCARCBF(2)CIZ6-1COE1COMP1COUPCOUP-TFCOUP-TF2CP2CREBCTFCUTL1Cdc5Cdx-2Chx10CrxDEAF-1DP-1DeltaNp63alphaE12E2FE2F-1E2F-1_DP-1E2F-1_DP-2E2F-4_DP-1E2F-4_DP-2E47E4BP4E4F1ELF-1EN-1ER-alphaERR1Egr-1Elk-1Evi-1FAC1FOXC2FOXD3FOXJ2FOXM1FOXO1FOXO4FOXP1aFOXP3FREAC-4FXRGATA-4GCMaGLI1GRGfiHEBHES-1HFH-1HFH-2HIF-1HLFHMG_IHNF-1alphaHNF-3HNF-3alphaHNF-3betaHNF-4HNF-4alpha1HNF-6HOXA3HOXA5HP1_site_factorHSFHSF1HTFHen-1HlfIPF1IRF-1IRF-2IRF-7AIRF-8Irf-2LBP-1LEF-1LUN-1LXR-alphaLXR-alpha_RXR-alphaLhx3aLmo2LyF-1MAFMEF-2AMEF2MITFMRF-2MTF-1MZF-1MZF_5-13MaxMsx-1Myc-MaxNCXNERF-1aNF-1NF-AT1NF-E2NF-YNF-kappaBNF-kappaB1NF-muE1NRF-1NRF-2NRSFNkx2-1Nkx2-2Nkx2-5Nkx3-1Nkx5-1Nkx6-2Nrf2OCA-BOlf-1PEA3POU1F1POU2F1POU3F1POU3F2POU6F1_(c2)PPAR-alphaPPARgammaPPARgamma-RXRalPTF1-betaPU.1Pax-1Pax-2Pax-5Pax-6Pax-8Pax6PbxPbx1Pbx1aPitx2RAR-alphaRFX1RORalfa-1RORalfa-2RORalpha1RORalpha2RREB-1RSRFC4RXR-VDRRb_E2F-1_DP-1RelARoazS8SAP-1SF-1SOX-9SOX17SP1SREBP-1SRFSRYSTAT1STAT1alphaSTAT5ASmad1Smad3Smad4Sox10Sox5Sox9Sp1Sp3Spz1Stra13TCF-4TEFTFII-ITFIIATal-1Tal1beta-E47STbx5Tel-2aThing1-E47USFVDRXBP-1XPF-1YY1ZEB_(1124_AA)ZF5ZIC2ZIDZic1Zic3aMEF-2c-Ets-1c-Mybc-Mycc-RELc-Relcore-binding_factorfactor_deltamyogeninnamep300p50p53p65
Browse All Regions
View a list of all the search regions in this database, and the number of motifs found in each region.
Browse by Location
View a list of all the search regions in this database found in the specified genomic region.
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Browse Groups & Modules
Browse summary information about motif groups or modules in this database.
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annotation-based
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Motif discovery and post-processing for promoter regions of 18,779 protein-coding target genes (Ensembl Build 40, NBCI v36, hg18) returned 236,227 conserved DNA sequence motifs for 18,676 genes, after applying an empirical discovery p-value threshold of 0.1.
Motifs were discovered in sequence sets consisting of regions around the transcription start site (TSS) of a single, canonical transcript for each gene, and corresponding regions from other species. Input sequence sets were assembled from genome sequence data for 41 vertebrate species whose genome data were taken from Ensembl, ENCODE and low coverage read files. Input sequence sets had a median of 20 and a mode or 22 vertebrate species. Search regions were -1.5Kb/+200b relative to a TSS, net of most types of repeats and of coding sequences, which were masked. For v9.0, 'annotation-based' modules, i.e. co-occurring patterns of motifs that were similar to known transcription factor binding site models in TRANSFAC, JASPAR and ORegAnno were added.